anml
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Installing ANML
API Reference
Glossary
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Index
A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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S
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U
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V
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X
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Y
A
add_re (Variable attribute)
add_solver() (CompositeSolver method)
anml.bootstrap
module
anml.bootstrap.bootstrap
module
anml.data
module
anml.data.data
module
anml.data.data_specs
module
anml.models
module
anml.models.interface
module
anml.parameter
module
anml.parameter.likelihood
module
anml.parameter.parameter
module
anml.parameter.prior
module
anml.parameter.processors
module
anml.parameter.spline_variable
module
anml.parameter.utils
module
anml.parameter.variables
module
anml.solvers
module
anml.solvers.composite
module
anml.solvers.interface
module
assert_model_defined() (CompositeSolver method)
(Solver method)
assert_solvers_defined() (CompositeSolver method)
B
Bootstrap (class in anml.bootstrap.bootstrap)
BootstrapError
build_bounds_fe() (Variable method)
build_bounds_re() (Variable method)
build_bounds_re_var() (Variable method)
build_constraint_matrix_fe() (Spline method)
(Variable method)
build_constraint_matrix_re() (Variable method)
build_constraint_matrix_re_var() (Variable method)
build_design_matrix_fe() (Variable method)
build_design_matrix_re() (Variable method)
build_linear_constraint() (in module anml.parameter.utils)
build_re_matrix() (in module anml.parameter.utils)
C
col_group (Variable attribute)
col_groups (DataSpecs attribute)
col_obs (DataSpecs attribute)
col_obs_se (DataSpecs attribute)
collect_blocks() (in module anml.parameter.variables)
collect_priors() (in module anml.parameter.utils)
combine_constraints() (in module anml.parameter.utils)
CompositeSolver (class in anml.solvers.interface)
constr_grid_size_global (Spline attribute)
constr_lb_fe (ParameterBlock attribute)
(Spline attribute)
constr_lb_re (ParameterBlock attribute)
constr_lb_re_var (ParameterBlock attribute)
constr_matrix_fe (ParameterBlock attribute)
(Spline attribute)
constr_matrix_re (ParameterBlock attribute)
constr_matrix_re_var (ParameterBlock attribute)
constr_ub_fe (ParameterBlock attribute)
(Spline attribute)
constr_ub_re (ParameterBlock attribute)
constr_ub_re_var (ParameterBlock attribute)
covariate (Variable attribute)
covariates (Data attribute)
create_spline() (Spline method)
D
Data (class in anml.data.data)
data (Data attribute)
data_spec_col_attributes (Data property)
DataError
DataSpecCompatibilityError
DataSpecs (class in anml.data.data_specs)
DataTypeError
degree (Spline attribute)
derivative_constr (Spline attribute)
design_matrix_fe (ParameterBlock attribute)
(Variable attribute)
design_matrix_re (ParameterBlock attribute)
(Variable attribute)
detach_data_specs() (Data method)
detach_param_set() (Data method)
E
EmptySpecsError
encode_groups() (in module anml.parameter.utils)
(Variable method)
error_value() (GaussianPrior method)
(Prior method)
F
fe_prior (Variable attribute)
fit() (MultipleInitializations method)
(Solver method)
forward() (Model method)
G
GaussianLikelihood (class in anml.parameter.likelihood)
GaussianPrior (class in anml.parameter.prior)
GaussianPriorError
get_grad() (Likelihood method)
get_neg_log_likelihood() (Likelihood method)
get_param_function_index() (ParameterSet method)
get_param_index() (ParameterSet method)
grad() (GaussianPrior method)
(Prior method)
gradient() (Model method)
grid_size (SplineLinearConstr attribute)
I
include_intercept (Spline attribute)
Intercept (class in anml.parameter.variables)
K
knots_num (Spline attribute)
knots_type (Spline attribute)
L
l_linear (Spline attribute)
Likelihood (class in anml.parameter.likelihood)
LikelihoodError
link_fun() (Parameter method)
lower_bound (Prior attribute)
M
mean (GaussianPrior attribute)
Model (class in anml.models.interface)
model (CompositeSolver property)
(Solver property)
ModelNotDefinedError
module
anml.bootstrap
anml.bootstrap.bootstrap
anml.data
anml.data.data
anml.data.data_specs
anml.models
anml.models.interface
anml.parameter
anml.parameter.likelihood
anml.parameter.parameter
anml.parameter.prior
anml.parameter.processors
anml.parameter.spline_variable
anml.parameter.utils
anml.parameter.variables
anml.solvers
anml.solvers.composite
anml.solvers.interface
multi_param_set (Data property)
multi_spec (Data property)
MultipleInitializations (class in anml.solvers.composite)
N
num_fe (ParameterBlock attribute)
num_re (Parameter property)
(ParameterBlock property)
(ParameterSet property)
num_re_var (ParameterBlock attribute)
O
objective() (Model method)
order (SplineLinearConstr attribute)
P
param_function (ParameterFunction attribute)
param_function_fe_prior (ParameterFunction attribute)
param_function_name (ParameterFunction attribute)
param_name (Parameter attribute)
(ParameterSet attribute)
Parameter (class in anml.parameter.parameter)
parameter_functions (ParameterSet attribute)
ParameterBlock (class in anml.parameter.variables)
ParameterError
ParameterFunction (class in anml.parameter.parameter)
parameters (ParameterSet attribute)
ParameterSet (class in anml.parameter.parameter)
ParameterSetError
predict() (MultipleInitializations method)
(Solver method)
Prior (class in anml.parameter.prior)
PriorError
process_all() (in module anml.parameter.processors)
process_data() (Data method)
process_for_betas() (in module anml.parameter.processors)
process_for_gammas() (in module anml.parameter.processors)
process_for_us() (in module anml.parameter.processors)
R
r_linear (Spline attribute)
re_prior (Variable attribute)
re_priors (ParameterBlock attribute)
re_var_padding (ParameterBlock attribute)
re_var_prior (Variable attribute)
reset() (ParameterBlock method)
(Variable method)
run_bootstraps() (Bootstrap method)
S
set_data_specs() (Data method)
set_fe_prior() (Spline method)
set_param_set() (Data method)
Solver
(class in anml.solvers.interface)
SolverNotDefinedError
solvers (CompositeSolver property)
Spline (class in anml.parameter.spline_variable)
spline (Spline attribute)
SplineLinearConstr (class in anml.parameter.spline_variable)
std (GaussianPrior attribute)
U
upper_bound (Prior attribute)
V
var_link_fun() (Variable method)
Variable (class in anml.parameter.variables)
VariableError
variables (Parameter attribute)
(ParameterBlock attribute)
(ParameterSet attribute)
X
x (Spline attribute)
x_domain (SplineLinearConstr attribute)
Y
y_bounds (SplineLinearConstr attribute)
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